Results for "Metagenome"
Users
About me: I am working on Phylogenetic and functional diversity of forest soil metagenome using Next Generation Sequencing.3153 days ago
Blogs
Computer simulation of genetic mechanism !!
...lo/metapopgen MetaSim A tool to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets http://ab.inf.uni-t...2958 days ago
BBTools for bioinformatician !
...[As of BBmap v. 36.59] rendomreads.sh gains the ability to simulate metagenomes. coverage=X will automa...a level that will give X average coverage (decimal point is allowed).metagenome will assign each scaffold a r...2253 days ago
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Bookmarks
- ...deletions, genome rearrangements and chimeric assemblies presented in metagenomes. At the genome level with re...e-independent and statistically rigorous measure of single genome and metagenome assembly accuracy, which can...
2914 days ago
- ...mples of DNA from uncharacterized environments that may contain hundreds or even thousands of species. One of the main challenges in analyzing a metagenome is phylogenetic classificatio...
2747 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...earningMetaVelvet is an extension of Velvet assembler to de novo metagenome assembly from short sequence...) is a sequencing approach and assembly software for profiling T-cell metagenomes using short reads from the m...2668 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...elsaccount.sourceforge.net/MetaSim A tool to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets http://ab.inf.uni-t...3720 days ago
Genome Assembly Tools and Software - PART1 !!
...ying bins (genomes) of the microbes in their metagenomes by simply providing assemble...ded as > 200 bp) currently widely-used in metagenome projects. Results of extensiv...me assembly using de Bruijn graph of matched metagenome as the reference EPGA2 &...2668 days ago
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Wire posts
Opportunity posts
Bioinformatics Project Assistant at NITW
...SEMENT FOR PROJECT FELLOW (Research Staff) Applications are invited for the post of Project Fellow (Research Staff) for the project entitled ‘Metagenome derived nitroreductases for d...3305 days ago
Project Assistant BioInformatics
...UI) and Unix; Perl / Python / R /C-programming. Practical knowledge of analysis of Next generation sequence datasets (amplicon sequencing, whole metagenome, and complete genome sequenci...3090 days ago
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Tags
- Research Interest: Bioinformatics High-throughput and high-dimensional data analysis Microbiome data analysis (Main focus) Next-generation and third-generation sequencing data analysis for genomics Gene expression data analysis Machine learning for biological data Biomarker...
Tags: Kanthida, Kusonmano, metagenome, bioinformatics, big data
1086 days ago
Comments
- CheckM for Metagenome https://linsalrob.github.io/ComputationalGenomicsManual/CheckM/
618 days ago
- ...e: canu -p meta \ -d meta \ genomeSize=40m \ useGrid=false \ -nanopore-raw /vol_b/public_data/minion_brown_metagenome/brown_metagenome.2D.10.fasta This puts...
2158 days ago
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