Results for "Metagenome"
Users
About me: I am working on Phylogenetic and functional diversity of forest soil metagenome using Next Generation Sequencing.3153 days ago
Blogs
Computer simulation of genetic mechanism !!
...lo/metapopgen MetaSim A tool to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets http://ab.inf.uni-t...2958 days ago
BBTools for bioinformatician !
...[As of BBmap v. 36.59] rendomreads.sh gains the ability to simulate metagenomes. coverage=X will automa...a level that will give X average coverage (decimal point is allowed).metagenome will assign each scaffold a r...2253 days ago
- +1 more Blogs
Bookmarks
- ...deletions, genome rearrangements and chimeric assemblies presented in metagenomes. At the genome level with re...e-independent and statistically rigorous measure of single genome and metagenome assembly accuracy, which can...
2914 days ago
- ...mples of DNA from uncharacterized environments that may contain hundreds or even thousands of species. One of the main challenges in analyzing a metagenome is phylogenetic classificatio...
2747 days ago
- +20 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...earningMetaVelvet is an extension of Velvet assembler to de novo metagenome assembly from short sequence...) is a sequencing approach and assembly software for profiling T-cell metagenomes using short reads from the m...2668 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...elsaccount.sourceforge.net/MetaSim A tool to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets http://ab.inf.uni-t...3720 days ago
Genome Assembly Tools and Software - PART1 !!
...ying bins (genomes) of the microbes in their metagenomes by simply providing assemble...ded as > 200 bp) currently widely-used in metagenome projects. Results of extensiv...me assembly using de Bruijn graph of matched metagenome as the reference EPGA2 &...2668 days ago
- +4 more Top-level pages
Wire posts
Opportunity posts
Bioinformatics Project Assistant at NITW
...SEMENT FOR PROJECT FELLOW (Research Staff) Applications are invited for the post of Project Fellow (Research Staff) for the project entitled ‘Metagenome derived nitroreductases for d...3305 days ago
Project Assistant BioInformatics
...UI) and Unix; Perl / Python / R /C-programming. Practical knowledge of analysis of Next generation sequence datasets (amplicon sequencing, whole metagenome, and complete genome sequenci...3090 days ago
- +2 more Opportunity posts
Tags
- Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a command subcommand syntax: virmet fetch --viral n, for example, downloads the bacterial database. Other available subcom...
Tags: Bioinformatics, Analysis, NGS, VirMet, Genome, MetaGenome
2747 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or even thousands of species. One of the main challenges in analyzing a metagenome is phylogenetic classification of raw sequence reads into groups representing the same or similar ...
Tags: Bioinformatics, Analysis, NGS, PHYMMBL, Genome, MetaGenome, Classification, Reads
2747 days ago
- +12 more Tags
Comments
- CheckM for Metagenome https://linsalrob.github.io/ComputationalGenomicsManual/CheckM/
618 days ago
- ...e: canu -p meta \ -d meta \ genomeSize=40m \ useGrid=false \ -nanopore-raw /vol_b/public_data/minion_brown_metagenome/brown_metagenome.2D.10.fasta This puts...
2158 days ago
- +1 more Comments
