Results for "Metagenomics"

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  • Metagenomics role in antibiotic resistance

    Related latest article: http://www.nature.com/nature/journal/v509/n7502/pdf/nature13377.pdf

    Tags: metagenomics, antibiotics resistant, sequencing

    1032 days ago

  • Fancy Oneliner for Bioinformatics !!

    This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder struct...

    Tags: Bioinformatics, Analysis, Visualization, SAM, BAM, Oneliner, NGS, metagenomics

    266 days ago

  • Bambus

    Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffold...

    Tags: Scaffolders, Bioinformatics, Assembly, Metagenomics

    226 days ago

  • Shinyheatmap

    Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such big data has posed technical challenges in biology, both in terms of available computational resources as well a...

    Tags: Bioinformatics, Analysis, NGS, HeatMap, Genome, Shinyheatmap, R, Visualize, Map, Transcriptomics, Metabolomics, Metagenomics

    160 days ago

  • MaxBin: software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm.

    MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequenci...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Bin, Binning, Metagenomics

    24 days ago

  • MetaBAT: An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities

    MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute complex microbial communities, or metagenome binning, enables the study of individual organisms ...

    Tags: Bioinformatics, Analysis, Assembly, Genome, MetaBAT, MetaGenomics, Contamination

    24 days ago

  • COCACOLA (binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge)

    COCACOLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paired-end reads LinkAge to automatically bin contigs into OTUs. Furthermore, COCACOLA seamlessly embraces customized prior k...

    Tags: Bioinformatics, Analysis, Assembly, Genome, COCACOLA, MetaGenomics, Contamination

    23 days ago