Results for "Mixed"
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Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous di...2865 days ago
Pollux: platform independent error correction of single and mixed genomes
...e error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to c...2526 days ago
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Bio++ : C Language libraries for your biological need
...A, NJ, BioNJ.Maximum likelihood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree reconstructi...elihood models.Virtually any kind of non-homogeneous model is supported!Mixed models (beta). Molecular evo...3931 days ago
Genome Assembly Tools and Software - PART2 !!
...ckage that allows for inference about the structure of a population from a set of short sequence reads as obtained from ultra-deep sequencing of a mixed sample. The package contains...2669 days ago
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Useful Publications and Websites for Deep Sequencing Data Analysis
...eference-free validation of short read data. Schröder et al, PLoS One 5(9):e12681, 2010. PubMedCentral Correction of sequencing errors in a mixed set of reads. Salmela, Bioinf...3762 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...quo;data management, estimation of the genetic relationships from SNPs, mixed linear model analysis of vari...solute copy number and mutation multiplicitie; reextracts data from the mixed DNA population Input: HAPSEQ...2892 days ago
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- ...k and decimal.mark are set to the same value (period and comma are not uncommonly used for each, and this is a check that conventions have not got mixed). merge() can create a resul...
3288 days ago
Bio-Scripts
- ...OpenJDK Runtime Environment (build 11.0.6+10-post-Ubuntu-1ubuntu118.04.1) OpenJDK 64-Bit Server VM (build 11.0.6+10-post-Ubuntu-1ubuntu118.04.1, mixed mode, sharing) jit@jit-HP-Pr...
1522 days ago
Commandline for paired end reads simulation with BBMap !
(JitMetaENV) ➜ mixedSample git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq pair...nt/ align2.RandomReads3 build=1 ref=mixed.fa out=reads_BBMAP250.fq pair...g align2.RandomReads3 [build=1, ref=mixed.fa, out=reads_BBMAP250.fq, pa...973 days ago
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Pollux: platform independent error correction of single and mixed genomes
Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer err...Tags: Pollux, Platform, Independent, Error, Correction, Single, Mixed, Genomes
2526 days ago
Comments
Comment on "Next generation sequencing in R or bioconductor environment"
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples http://bioinformatics.oxfordjournals.org/content/early/2014/09/10/bioinformatics.btu607.abstract3506 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
...p; Generalized Linear Models Yes Yes Yes Yes Yes Mixed Effects Models Ye...3535 days ago
