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The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation...3405 days ago
RNA-Seq De novo Assembly Using Trinity
...novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and But...2955 days ago
- ...Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single p...
2872 days ago
- ...e it also leverages the use of R and python in background for specific modules. Major focus of CSBB is to al...Linux, UNIX, MAC OS and Windows platforms. Currently CSBB provides 13 modules focused on analytical tasks l...
2857 days ago
- ...number and produces valuable outputs for the manual improvement of scaffolds scaffold constitutes the central scaffold-builder and comprises two modules: i) the interative_scaffold_...
2843 days ago
- ...ing more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to training modules (webinars and PowerPoint pres...
2617 days ago
- ...ill automatically close the gaps resulting from genome assembly or scaffolding more details. The pipeline consists of three steps/modules: redundancy reduction: det...
2793 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) package...2684 days ago
- ...uence between the primers and calculate the quality.5.Check for various constraints, including quality, length, uncalled bases, and user-supplied modules. http://neufeldserver.uwater...
2649 days ago
Many-Core Engine (MCE) for Perl example
...kers. MCE enhances that model by adding the ability to chunk the next n elements from the input stream to the next available worker. CORE MODULES Three modules make up the core engine for M...2641 days ago
