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Useful Publications and Websites for Deep Sequencing Data Analysis
...high-throughput DNA sequencing libraries for multiplexed target capture. Rohland &a...eb Site MuMoD: a Bayesian approach to detect multiple modes of protein–DNA bi...., Genome Res 19(6):1068-76, 2009. Full Text Multiplexed shotgun genotyping for rap...3768 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ment R http://linum.cofc.edu/software.html#metasimRNA Seq Simulator RSS takes SAM alignment files from RNA-Seq data and simulates over dispersed, multiple replica, differential, non-st...3726 days ago
List of In-silico Binding Site Prediction Tools
...imilarity detected by geometric hashing (Brakoulias and Jackson 2004). Multiple alignments, structural superp...IS: http://bioinfo3d.cs.tau.ac.il/MultiBind/index.html Web servers for multiple alignment of protein 3D bindi...3733 days ago
Perl one-liner for bioinformatician !!!
...less /^$/' #remove all blank linesperl -lne 'print if length($_) < 20' #print all lines with length less than 20.perl -00 -pe '' #If there are multiple spaces, delete all leaving on...3617 days ago
Commercial and public next-gen-seq (NGS) software
...ollege. LookSeq - LookSeq is a web-based application for alignment visualization, browsing and analysis of genome sequence data. LookSeq supports multiple sequencing technologies, alig...3507 days ago
3484 days ago
Software packages for next gen sequence analysis
...lege. * LookSeq - LookSeq is a web-based application for alignment visualization, browsing and analysis of genome sequence data. LookSeq supports multiple sequencing technologies, alig...3231 days ago