Results for "N50"
Blogs
BBTools for bioinformatician !
..."-Xmx8g" and increase "max=" to something much higher.Alternatively, if these are assemblies and you're interested in continuity information (L50, N50, etc), you can run stats on e...2260 days ago
Bookmarks
- ...genomes grows by the day, quality assessment of the resulting assembled sequences remains complicated and mostly limited to technical measures like N50. BUSCO provides meas...
2907 days ago
OPERA : Optimal Paired-End Read Assembler
...footprint). We therefore encourage you to download and use our latest version: OPERA-LG. In our benchmarks, it has significantly improved corrected N50 and reduced the number of sca...2785 days ago
- +9 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...sion Signatures)is a new easy-to-use tool to generate contig scaffolds NN50-calculator 0.5 – Evaluate the Correctness of Genome AssembliesNN50-calculator (Normalized N...2676 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...the fastest and most efficient assemblers ever, it can generated contigs with highest accuracy over all five selected assemblers and longest contig N50 in all selected parallel asse...2676 days ago
- ...##############################[Mon May 7 11:29:35 2018] Reporting statistics...#fname contigs bases GC [%] contigs >1kb bases in contigs >1kb N50 N90 Ns longesttest/contigs.fa...
2180 days ago
Wire posts
Bio-Scripts
- ...### ### Script Name : calcN50.pl ### Description : This script calculates the N50 of a collection of sequences...quence to consider it for the N50 calculation ### Output...v (@sorted) { if($v >= $N50) { $count++; } }...
2694 days ago
- ...13 14:54:34 : n90 748 [ INFO] 2018-07-13 14:54:34 : n70 1578 [ INFO] 2018-07-13 14:54:34 : n50 22...
2113 days ago
- +5 more Bio-Scripts
Tags
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
Tags: Bioinformatics, Computational Biology, Education, Plot, N50, NGS
2999 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
Tags: Bioinformatics, Computational Biology, Education, liftover, N50, NGS, Assembly, Genomics
2999 days ago
- +2 more Tags
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
It is recommended to used genomes (N50 > 1Mb) for synteny analysis https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2026-42004 days ago
