Results for "N50"

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  • Whar are N50 and L50 of a contig assembly file? How to calculate it?

    I am currently dealing with new contig assembly dataset, and bit confused about N50 and L50 stuff ....

    Tags: NGS, N50, L50, Contig, Assembly, Genome

    531 days ago

  • n50PlottingTools

    Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools

    Tags: Bioinformatics, Computational Biology, Education, Plot, N50, NGS

    556 days ago

  • liftover

    Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/

    Tags: Bioinformatics, Computational Biology, Education, liftover, N50, NGS, Assembly, Genomics

    556 days ago

  • CrossMap

    CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig,...

    Tags: Bioinformatics, Computational Biology, Education, CrossMap, N50, NGS, Assembly, Genomics

    556 days ago

  • Pilon

    Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read ...

    Tags: Bioinformatics, Computational Biology, Education, Pilon, N50, NGS, Assembly, Genomics

    556 days ago

  • Understanding N50 http://jermdemo.blogspot.be/2008/11/calculating-n50-from-velvet-output.html #N50 #Assembly #Genome #Contigs

    Tags: N50, Assembly, Genome, Contigs

    342 days ago