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Results for "N50"

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• • Jit@jit.aber

  

  n50PlottingTools

  Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools

  Tags: Bioinformatics, Computational Biology, Education, Plot, N50, NGS

  2992 days ago

• • Jitendra Narayan@admin

  

  liftover

  Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/

  Tags: Bioinformatics, Computational Biology, Education, liftover, N50, NGS, Assembly, Genomics

  2992 days ago

• • Jitendra Narayan@admin

  

  CrossMap

  CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig,...

  Tags: Bioinformatics, Computational Biology, Education, CrossMap, N50, NGS, Assembly, Genomics

  2992 days ago

• • Rahul Nayak@rahul

  

  Pilon

  Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variation among strains, including large event detection Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read ...

  Tags: Bioinformatics, Computational Biology, Education, Pilon, N50, NGS, Assembly, Genomics

  2992 days ago