67 days ago
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for working with big data pipelines in computer systems of diff...1131 days ago
Tools to detect synteny blocks regions among multiple genomes
...lso be referred to as shared synteny. The NHBLI/NCBI Glossary define synteny as &l...and importance of all these regions (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2...s in ancient synteny blocks. SyDiG (http://www.ncbi.nlm.nih.gov/pubmed/21441096)...2599 days ago
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs...3898 days ago
Next Generation Sequencing (NGS) Tutorials
...1 DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089...3476 days ago
Virtual Bioinformatics Online Tutorial
...atics Distance Learning - Bioinformatics and Functional genomics courses offered by IMC Bioinformatics, University of Tampere Tutorials using NCBI Bioinformtics Tools3909 days ago
Genome Assembly Tools and Software - PART2 !!
...UMD consists of the UMD Trimmer, UMD Overlapper and a modified version of Phrap.It is capable of assembling data downloaded directly from the NCBI Trace Archive. The pipeline r...2674 days ago
3931 days ago
Useful Links for Bioinformaticians
Bioinformatics demands knowledge of various inter-linked subjects. This page provide links of some the good computer, biology and related tutorials. Introductio...3119 days ago
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Postdoctoral Fellowship in Bioinformatics and Evolutionary Genomics
...e, as well as resources made available through NIH’s Center for Information Technology (CIT) and the National Center for Biotechnology Information (NCBI). For more information on...3310 days ago
Postdoctoral Fellowship in Bioinformatics at pesolelab
...eper understanding of gene and genome structure and function (please look at our PubMed publications for more details about our research http://www.ncbi.nlm.nih.gov/pubmed/?term=peso...3128 days ago
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2297 days ago
Bioinformatician become producer/director !!!
...: Eak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge R...Rehta Hai PDB Ek Numbari Structure Dus Numbari GCG Karo Sajana Naukar NCBI Ka 1942 -- A KEGG Story Alg...3907 days ago
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1205 days ago
Python script to download covid genome !
...s://www.gisaid.org/ has more (1200?), but they require you to sign up import requests import yaml seqs = yaml.load(requests.get("https://www.ncbi.nlm.nih.gov/core/assets/genba...1125 days ago
3892 days ago
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @A...Tags: fasta, multiple fasta, ncbi, entrez, perl
3898 days ago
Tags: Details, annotation, genes, gene_info, function, ncbi, detail
1930 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...ionship or biological interest. Obtain the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or Ensembl. Gene annotation:...412 days ago
Comment on "Basic command-line to run BLAST"
...earches can be performed against many different databases, including the NCBI GenBank, RefSeq, and non-redu...been set, the BLAST search can be run. This can be done online using the NCBI BLAST website or locally usin...412 days ago