List of Bioinformatics Software Tools for Next Generation Sequencing
...downloads come directly from NCBI Ingenuity Variant Analys..., + 50 other formats consumes NCBI data directly Genomatix..., 1000 genomes, HapMap, OMIM, NCBIGene Output: VCF + JSON...IDs from Ensembl, EntrezGene, NCBI GI numbers, NCBI UniGene IDs...2871 days ago
2831 days ago
Genome Assembly Tools and Software - PART1 !!
...is of Illumina sequence data, including the A5 pipeline, A5-miseq, tools to evaluate assembly quality, and scripts to facilitate data submission to NCBI and the RAST annotation syste...2647 days ago
2312 days ago
Tools for bacterial whole genome annotation
...d pathway analysis of your genome(s)… which is in-built in RAST. NCBI Prokaryotic Genome Annotation...eats, insertion sequences, transposons and other mobile elements. PGAP: NCBI has developed an automatic pr...2293 days ago
Computational resources for TE discovery and TE detection
...nest http://www.plantgdb.org/prj/TE_nest/TE_nest.html TRANSPO http://alggen.lsi.upc.es/recerca/search/transpo/transpo.html TSDfinder http://www.ncbi.nlm.nih.gov/CBBresearch/Lands...2236 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-c...812 days ago
Some useful Bioinformatics links
...tion: dealing with the data deluge https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4...ies based on chromatin interactions. - PubMed - NCBI https://www.ncbi.nlm.nih.gov...ion of Multidimensional Omics Data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3...2203 days ago