Results for "NCBI"

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  • Download mutliple fasta file from NCBI in one GO!!

    if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @A...

    Tags: fasta, multiple fasta, ncbi, entrez, perl

    1521 days ago

  • NCBI PSI-BLAST Tutorial

    http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.

    Tags: PSI Blast, BLAST, NCBI, Alignment, Search, Sequence

    1520 days ago

  • PubMed opens for comment

    The informal conversations that researchers have at scientific meetings look set to move online, if a new initiative by the US National Center for Biotechnology Information (NCBI) has its way. On 22 October, the NCBI of Bethesda, Maryland, launched the pilot phase of a programme called PubMed Com...

    Tags: PubMed, Research, NCBI

    1457 days ago

  • Conserved Domain Database (CDD) version 3.11 released

    National Center for Biotechnology Information (NCBI) Conserved Domain Database (CDD) version 3.11 is now available with 596 new or updated NCBI-curated and 49,641 total domain models. The new version now contains the most recent Pfam release 27. Updates to the Conserved Domain Database include...

    Tags: Conserve, Domain, CDD, PSSMs, NCBI

    1339 days ago

  • Update Genome Workbench 2.7.15 released

    NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data. With Genome Workbench, you can view data in publically available sequence databases at NCBI, and mix this data with your own private data. Genome Workbench can display sequence data in many ways, includ...

    Tags: Bioinformatics, Journals, Computational Biology, NCBI, Workbench, Genome, Visualization

    1332 days ago

  • NCBI Gene Screencast

    A short walkthrough of the NCBI Gene page

    Tags: NCBI, Gene, Screencast

    1239 days ago

  • The tool automatically downloads and unpacks the selected NCBI Blast databases from NCBI ftp server http://www.dnabaser.com/download/NCBI-BLAST-downloader/ #NCBI #Database #Download

    Tags: NCBI, Database, Download

    1184 days ago

  • Webinar: BLAST in the Cloud

    Presented July 30, 2014 and covering: an NCBI BLAST AMI at Amazon Web Services; introduction to AWS and setting up an instance; running command line BLAST and using the BLAST URL API via the AMI; and answers to attendee questions.

    Tags: NCBI, Commandline, API, Cloud

    1131 days ago

  • Sequence Viewer: Download Transcripts, Exons and Proteins

    How to download FASTA sequence for certain gene features while in the NCBI's Sequence Viewer. Sequence Viewer homepage: www.ncbi.nlm.nih.gov/projects/sviewer/ Sequence Viewer playlist: https://www.youtube.com/playlist?list=PL76D7EE6A6A8AC1C3

    Tags: NCBI, Gene, Sequence, Viewer

    1131 days ago

  • NCBI Updated Tree Viewer http://www.ncbi.nlm.nih.gov/tools/treeviewer/ #NCBI #Viewer #Tree #Updates

    Tags: NCBI, Viewer, Tree, Updates

    884 days ago