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Results for "
NGS
"
Wire posts
John Parker
@parker
NGS
analysis pipeline http://www.egr.msu.edu/changroup/Protocols/
NGS
%20analysis%20example%20of%20a%20pipeline.html #Pipeline #
NGS
#Genomics #Tutorial
3584 days ago
Radha Agarkar
@radhaagarkar
Webinar http://webinars.sciencemag.org/webinar/archive/importance-bioinformatics-
ngs
#
NGS
#Webinar
3610 days ago
Jit
@jit.aber
Extract list of read ID from bam file: samtools view mbi.sorted.bam |perl -ne '/ID/ && print' > extractedID.sam #Extract #Ids #SAM #BAM #
NGS
3598 days ago
Jit
@jit.aber
FastaQ 2 Fasta Oneliner: paste - - - -< totalRNA_placental_1.fastq | perl -pale'$_="@F[0..1]"'|tr "\^@" "\>" | perl -pale 's/\s/\n/g' #Oneliner #
NGS
#FastaQ #Fasta
3598 days ago
Jitendra Narayan
@admin
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #
NGS
3591 days ago
John Parker
@parker
Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #
NGS
#Bacteria #Genome #Tricks #Tips #Velvet
3589 days ago
santosh pal
@santoshpal
Load the ShortRead and BiocParallel packages for
NGS
data analysis in R #bioconductor #R #qualitycheck
3589 days ago
Jitendra Narayan
@admin
R getting strong for
NGS
analysis http://manuals.bioinformatics.ucr.edu/home/ht-seq #Packages #
NGS
#R #Bioconductor #Bowtie #Sequence #Analysis #SNP
3588 days ago
Rahul Nayak
@rahul
NGS
plot program allows you to easily visualize your
NGS
samples at functional genomic regions. https://code.google.com/p/
ngs
plot/ #
NGS
#
ngs
#Plot #
ngs
plot #Visualize #R
3587 days ago
Jitendra Narayan
@admin
Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #
NGS
3584 days ago
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