Results for "NGS"

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  • Perl one-liner for bioinformatician !!!

    With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.),...

    Tags: Bioinformatics, Computational Biology, Perl, NGS, Genome, Hacking, One-liner, Oneliner

    3590 days ago

  • Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #NGS

    Tags: FASTA, FASTAQ, NGS

    3590 days ago

  • How to sequence the human genome - Mark J. Kiel

    View full lesson: http://ed.ted.com/lessons/how-to-sequence-the-human-genome-mark-j-kiel Your genome, every human's genome, consists of a unique DNA sequence of A's, T's, C's and G's that tell your cells how to operate. Thanks to technological advances, scientists are now able to know the sequen...

    Tags: Bioinformatics, Computational Biology, Genome, Sequencing, NGS, Mapping

    3590 days ago

  • Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet

    Tags: Assembly, NGS, Bacteria, Genome, Tricks, Tips, Velvet

    3589 days ago

  • Genomics and Personalized Medicine Breakthroughs

    http://bit.ly/e8QGzY Human genome mapping is now enabling a breakthrough in medical innovation -- personalized medicine. What does this mean for patients? We can now identify predispositions to disease, predict how we metabolize drugs, and figure out what kinds of treatments we may respond to, an...

    Tags: Bioinformatics, Computational Biology, Personalised Medicine, Genomics, NGS

    3588 days ago

  • R getting strong for NGS analysis http://manuals.bioinformatics.ucr.edu/home/ht-seq #Packages #NGS #R #Bioconductor #Bowtie #Sequence #Analysis #SNP

    Tags: Packages, NGS, R, Bioconductor, Bowtie, Sequence, Analysis, SNP

    3587 days ago

  • Next generation sequencing in R or bioconductor environment

    There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It contains many speed and memory effective string con...

    Tags: Bioinformatics, Computational Biology, NGS, R, Bioconductor, Packages, Modules, Next generation sequencing

    3587 days ago

  • NGSplot program allows you to easily visualize your NGS samples at functional genomic regions. https://code.google.com/p/ngsplot/ #NGS #ngs #Plot #ngsplot #Visualize #R

    Tags: NGS, ngs, Plot, ngsplot, Visualize, R

    3586 days ago

  • Commercial and public next-gen-seq (NGS) software

    Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, CHiP-seq, browser and other features. Commercial. Wind...

    Tags: Bioinformatics, Computational Biology, NGS, Next generation sequencing, Tools, Software, SNP, Assembly, Pipeline

    3481 days ago

  • Is Linux OS necessary for Bioinformatics? If yes which one is the best for NGS analysis.

    I am currently working on NGS, and looking for a nice OS to handle huge amount of genomics data with an ease. Someone suggested me that Window OS will be a bad idea to use for NGS analysis. I need your valuable suggestion for the best. Thanks

    Tags: NGS, OS, Linux, Window, Best

    3586 days ago