Results for "NGS"
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Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/ You can also add your favourite NGS educational material, or workshop tutorial by commenting on this bookmarks for user benefit. Understandin...Tags: NGS, Tutorial, Education, Workshop, Pipeline
3478 days ago
Managing and Analyzing Next-Generation Sequence Data
Centralized Bioinformatics Core Facilities provide shared resources for the computational and IT requirements of the investigators in their department or institution. As such, they must be able to effectively react to new types of experimental technology. Recently faced with an unprecedented floo...Tags: Bioinformatics, Computational Biology, Data, Managment, NGS
3629 days ago
Next generation sequencing(NGS) books
Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.Tags: NGS, Pipeline, Method, Books, Tutorial
3618 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on PrimerIntroduction to PERL, Python, R and C/C++ for Bioinfo...Tags: Bioinformatics, Computational Biology, NGS, Tutorial, Algorithms, Concept
3594 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that use different software packages is difficult due t...Tags: Bioinformatics, Computational Biology, NGS, Orione, Microbiology, Visualization
3564 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic variants. http://www.broadinstitute.org/...Tags: Bioinformatics, Computational Biology, NGS, IGV, Visualization, Tutorial
3575 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinformatics (Gafni et al. 2014). It is also available for download fo...Tags: Bioinformatics, Computational Biology, NGS, COSMOS, Python, Workflow
3564 days ago
- Orange Bioinformatics extends Orange, a data mining software package, with common functionality for bioinformatics. The provided functionality can be accessed as a Python library or through a visual programming interface (Orange Canvas). The latter is also suitable for non-programmers. Orange Bi...
Tags: Bioinformatics, Cmputational Biology, Python, Orange, NGS, DataMining
3489 days ago
Rosalind Bioinformatics problems !!!
Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/Tags: Bioinformatics, Computational Biology, NGS, Genome, RNA-Seq, Algorithms, Online, Rosalind
3416 days ago
- LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. More at http://www.bx.psu.edu/~rsharris/...
Tags: Bioinformatics, NGS, Comparative Genomics, Genome, LASTZ
2929 days ago
