Results for "NGS"

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  • Next Generation Sequencing (NGS) Tutorials

    Institute of computational biomedicine, Cornell University provide an NGS workshop tutorial at http://chagall.med.cornell.edu/NGScourse/  You can also add your favourite NGS educational material, or workshop tutorial by commenting on this bookmarks for user benefit.  Understandin...

    Tags: NGS, Tutorial, Education, Workshop, Pipeline

    1134 days ago

  • Managing and Analyzing Next-Generation Sequence Data

    Centralized Bioinformatics Core Facilities provide shared resources for the computational and IT requirements of the investigators in their department or institution. As such, they must be able to effectively react to new types of experimental technology. Recently faced with an unprecedented floo...

    Tags: Bioinformatics, Computational Biology, Data, Managment, NGS

    1285 days ago

  • Next generation sequencing(NGS) books

    Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.

    Tags: NGS, Pipeline, Method, Books, Tutorial

    1274 days ago

  • Bioinformatics algorithms tutorials

    Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genome and RNAseq Assembly - a Hands on PrimerIntroduction to PERL, Python, R and C/C++ for Bioinfo...

    Tags: Bioinformatics, Computational Biology, NGS, Tutorial, Algorithms, Concept

    1250 days ago

  • Orione – a web-based framework for NGS analysis in microbiology

    End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construction of computational pipelines that use different software packages is difficult due t...

    Tags: Bioinformatics, Computational Biology, NGS, Orione, Microbiology, Visualization

    1220 days ago

  • Integrative Genomics Viewer (IGV) tutorial

    The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, gene annotations, and predicted genetic variants. http://www.broadinstitute.org/...

    Tags: Bioinformatics, Computational Biology, NGS, IGV, Visualization, Tutorial

    1231 days ago

  • COSMOS, our workflow management system for NGS data

    COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinformatics (Gafni et al. 2014).  It is also available for download fo...

    Tags: Bioinformatics, Computational Biology, NGS, COSMOS, Python, Workflow

    1220 days ago

  • Orange-Bioinformatics 2.5.34

    Orange Bioinformatics extends Orange, a data mining software package, with common functionality for bioinformatics. The provided functionality can be accessed as a Python library or through a visual programming interface (Orange Canvas). The latter is also suitable for non-programmers. Orange Bi...

    Tags: Bioinformatics, Cmputational Biology, Python, Orange, NGS, DataMining

    1145 days ago

  • Rosalind Bioinformatics problems !!!

    Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/

    Tags: Bioinformatics, Computational Biology, NGS, Genome, RNA-Seq, Algorithms, Online, Rosalind

    1072 days ago

  • LASTZ

    LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454. More at http://www.bx.psu.edu/~rsharris/...

    Tags: Bioinformatics, NGS, Comparative Genomics, Genome, LASTZ

    585 days ago