Results for "Nanopore"
Blogs
Software and Tools to detect structure variation with long reads !!
...variation caller using third generation sequencing Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore). It detects all types of SVs...2592 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
..., and string graph. List of analysis tools developed for Oxford Nanopore data BWA Fast nanopore data tuned alignment tool htt...ttps://documentation.tgac.ac.uk/display/NANOOK/NanoOK NanopolishNanopore analysis and genome assembly...2305 days ago
- +2 more Blogs
Bookmarks
Now time is come to revolutionize amino acid sequencing by Nanopore technology
Amino acid sequencing by Nanopore recognition tunneling method3665 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads w...r profiles, including: Illumina, PacBio and Oxford Nanopore.This is an especially importa...3209 days ago
- +46 more Bookmarks
Files
- ...nctionality of SPAdes was extended to enable assembly of IonTorrent data, as well as hybrid assembly from short and long reads (PacBio and Oxford Nanopore). In this article we present...
808 days ago
Discussion topics
Does anyone have Nanopore latest updates?
There was a lot of buzz about Oxford Nanopore Technologies® is developing t...efence and more. The platform technology uses nanopores to analyse single molecules...ns. With a broad patent portfolio, the Oxford Nanopore pipeline includes biological...3797 days ago
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
...arginAlign Description: SNV caller, specifically tailored to Oxford Nanopore Reads, written in Python; Pac...n github, example data uses 1000 genomes dataset Input: Output: nanopore Description: UCSC Nanopore...2893 days ago
Genome Assembly Tools and Software - PART1 !!
...iences). NanoMark – DNA Assembly Benchmark for Nanopore long reads DNA Assembly Benchmark for Nanopore long readsA system for benchm...by SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore flow cell technologies (MinIO...2670 days ago
- +5 more Top-level pages
Wire posts
News
- ...molecules using the SBX molecular expansion technology. The DNA sequence is then read out as the Xpandomer reporters pass sequentially through a nanopore detector. SBX is a molecular...
3229 days ago
1mb long DNA with Nanopore technology
The first continuous DNA read of more than a million bases (>1Mb) has been achieved, using Oxford Nanopore sequencing technology. Congratulations to Martin Smith and collaborators! Read more: http://bit.ly/2j5TNCO2313 days ago
Opportunity posts
Bioinformatics jobs at Acrannolife
Acrannolife are looking for skilled Bioinformatics Scientists with a minimum of 2yrs Experience in NGS data analysis including Nanopore Sequencing. This is an opportunity to work on...1272 days ago
Bio-Scripts
- # generate dotplot lastdb test/ref.fa lastal -f TAB test/ref.fa test/contigs.reduced.pacbio.fa | last-dotplot - test/contigs.reduced.pacbio.fa.ref.png lastal -f TAB test/ref.fa test/contigs.reduced.nanopore.fa | last-dotplot - test/contigs.reduced.nanopore.fa.ref.png
2236 days ago
Installing Porechop on Ubuntu !
...on.py -> build/lib/porechop copying porechop/nanopore_read.py -> build/lib/porechop...packages/porechop copying build/lib/porechop/nanopore_read.py -> /home/urbe/anacond...naconda3/lib/python3.6/site-packages/porechop/nanopore_read.py to nanopore_read.cpyt...2090 days ago
Polls
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3181 days ago
Tags
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group. Again, running spades.py will show you the options: spades.py This produces: SPAdes genome ...
Tags: SPAdes, hybrid, genome, assembly, ONT, Nanopore
2335 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. I...Tags: Run, miniasm, assembler, nanopore, reads
2314 days ago
Comments
- ...Python-based short read simulator that allows users to simulate reads from different sequencing platforms, including Illumina, PacBio, and Oxford Nanopore. It can also simulate differe...
400 days ago
Comment on "Short-read assembly using Spades !"
...rsburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is...405 days ago
- +38 more Comments
