Results for "Nanopore"

Top-level pages

  • List of Bioinformatics Software Tools for Next Generation Sequencing

    ...arginAlign Description: SNV caller, specifically tailored to Oxford Nanopore Reads, written in Python; Pac...n github, example data uses 1000 genomes dataset Input: Output: nanopore Description: UCSC Nanopore...

    2871 days ago

  • Genome Assembly Tools and Software - PART1 !!

    ...iences). NanoMark – DNA Assembly Benchmark for Nanopore long reads DNA Assembly Benchmark for Nanopore long readsA system for benchm...by SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore flow cell technologies (MinIO...

    2648 days ago

  • SPAdes hybrid genome assembly

    When you have both Illumina and Nanopore data, then SPAdes remains a good option for...t;filename> file with PacBio reads --nanopore <filename> fi...miseq.1.fastq -2 miseq.2.fastq \ --nanopore minion.fastq \ -o...

    2313 days ago

  • Run miniasm assembler on nanopore reads !

    Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and output...

    2292 days ago

  • Some useful Bioinformatics links

    ...Snp De novo assembly | Oxford Nanopore Technologies https://nanoporetech.com/taxonomy/term/131 De...pipeline https://github.com/nanoporetech/ont-assembly-polish Gener...assembled de novo using only nanopore sequencing data | Nature Meth...

    2203 days ago

  • Read Simulators

    ...logies; (1) Pacific Biosciences (PacBio) and (2) Oxford Nanopore (ONT). Listed below are some...PBSIM LongISLND SimLoRD NPBSS PaSS ONT Simulators NanoSim Nanopore SimulatION DeepSimulator De...

    545 days ago

  • Bioinformatics tools for genome assembly !

    ...cBio. Canu: A long-read assembler optimized for PacBio and Oxford Nanopore sequencing data. Flye: A...n extension of SPAdes for long-read data, such as those from PacBio or Nanopore. Minia: An assembler opt...

    248 days ago