Results for "Nanopore"

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  • An R package to enable visualisation of nanopore sequencing data !! http://sourceforge.net/p/rpore/wiki/Home/ #Nanopore #Omics #Seq

    Tags: Nanopore, Omics, Seq

    3528 days ago

  • https://www.youtube.com/watch?v=UtXlr19xTh8 #Nanopore #Debate

    Tags: Nanopore, Debate

    3485 days ago

  • https://nanoporetech.com/news/movies #Nanopore #Application

    Tags: Nanopore, Application

    3475 days ago

  • GraphMap - A highly sensitive and accurate mapper for long, error-prone reads

    GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant improvement over the state-of-the-art for PacBio re...

    Tags: Nanopore, Sequencing, GraphMap, MinION. NGS

    3187 days ago

  • Scaffolding of a bacterial genome using MinION nanopore sequencing

    Second generation sequencing has revolutionized genomic studies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs cannot be easily resolved. A new generation of sequencer...

    Tags: Nanopore, Sequencing, Technology, NGS

    3187 days ago

  • Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?

    Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?

    Tags: MinION, Nanopore, Oxford, NGS, Strand NGS, Avadis NGS

    3159 days ago

  • IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer

    This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a functions to generate a number plots for examining the statistics that we think will be useful for this task. However, nanopore sequencing is an emergi...

    Tags: tools, quality, assessment, Oxford, Nanopore, MinION, sequencer, IONiseR, R

    2317 days ago

  • SPAdes hybrid genome assembly

    When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was used to produce the B fragilis assembly by Mick Watson’s group. Again, running spades.py will show you the options: spades.py This produces: SPAdes genome ...

    Tags: SPAdes, hybrid, genome, assembly, ONT, Nanopore

    2313 days ago

  • Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome

    Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA for several decades. Recently, a nanopore-based sequencing instrument, the Oxford Nanopore MinION, has become available that we used for sequencing the S. cerevisiae genome. To make...

    Tags: Oxford, Nanopore, Sequencing, Hybrid, Error, Correction, de novo, Assembly, Eukaryotic, Genome

    2311 days ago

  • Bioinformatics tools developed for Oxford Nanopore data analysis !

    MinION is the only portable real-time device for DNA and RNA sequencing. Each consumable flow cell can now generate 10–20 Gb of DNA sequence data. Ultra-long read lengths are possible (hundreds of kb) as you can choose your fragment length. One of the technical advantage...

    Tags: Bioinformatics, tools, developed, Oxford, Nanopore, analysis, ONT

    2283 days ago