Results for "Nanopore"


  • Bioinformatics tools developed for Oxford Nanopore data analysis !

    MinION is the only portable real-time device for DNA and RNA sequencing. Each consumable flow cell can now generate 10–20 Gb of DNA sequence data. Ultra-long read lengths are possible (hundreds of kb) as you can choose your fragment length. One of the technical advantage...

    Tags: Bioinformatics, tools, developed, Oxford, Nanopore, analysis, ONT

    26 days ago

  • Now time is come to revolutionize amino acid sequencing by Nanopore technology

    Amino acid sequencing by Nanopore recognition tunneling method

    Tags: amino acid, proteome, nanopore

    1387 days ago

  • Analysis tool for Oxford nanopore data!! #nanopore #omics #seq

    Tags: nanopore, omics, seq

    1277 days ago

  • Single molecule Sequencing (SMS)

    Single molecule Sequencing (SMS)

    SMS is now slowly gaining place in sequencing world, more and more scientists now keen to use SMS method to sequence molecules in comparatively less complex protocal and less time. One of most successful so far is SMRT from Pacbio and others will be flood the market soon and may be one day it rep...

    Tags: Single molecule Sequencing, nanopore, pacbio smrt, DNA

    933 days ago

  • poRe: an R package for the visualization and analysis of nanopore sequencing data

    Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a s...

    Tags: poRe, R, package, visualization, analysis, nanopore, sequencing, data

    61 days ago

  • Run miniasm assembler on nanopore reads !

    Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. I...

    Tags: Run, miniasm, assembler, nanopore, reads

    36 days ago

  • NanoSim: nanopore sequence read simulator based on statistical characterization.

    NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. The first step of NanoSim is read characterization, which provides a comprehensive alignment-based analysis and gen...

    Tags: NanoSim, nanopore, sequence, read, simulator, statistical, characterization

    36 days ago

  • 1mb long DNA with Nanopore technology

    The first continuous DNA read of more than a million bases (>1Mb) has been achieved, using Oxford Nanopore sequencing technology. Congratulations to Martin Smith and collaborators! Read more:

    Tags: Read, nanopore, ngs, sequencing, 1mb

    34 days ago

  • LRCstats: Long Read Correction Statistics

    LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by third generation sequencing technology, as the name suggests, are lon...

    Tags: LRCstats, Long, Read, Correction, Statistics, pacbio, nanopore

    18 days ago