Results for "Neighborhood"
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DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral genes o...2561 days ago
- ...assignment of orthology relations. In closely-related species, gene neighborhood information can be used to re...for accurately predicting pairwise orthology relations based on gene neighborhood conservation. Analyses on sim...
2347 days ago
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Genome Assembly Tools and Software - PART1 !!
...ether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler outputs its sequence neighborhood as a linear sequence or as a...2668 days ago
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- Orthology relations can be used to transfer annotations from one gene (or protein) to another. Hence, detecting orthology relations has become an important task in the post-genomic era. Various genomic events, such as duplication and horizontal gene transfer, can cause erroneous assignment of o...
Tags: OrthoGNC, Software, Accurate, Identification, Orthologs, Gene, Neighborhood, Conservation
2347 days ago
G-NEST: The Gene NEighborhood Scoring Tool
The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.Tags: G-NEST, Gene, NEighborhood, Scoring, Tool
1300 days ago
