Results for "Next"

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  • #ConPADE: Genome #Assembly Ploidy Estimation from #Next-Generation Sequencing Data http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004229

    Tags: ConPADE, Assembly, Next

    2914 days ago

  • #Assembly #Algorithms for #Next-Generation Sequencing Data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874646/

    Tags: Assembly, Algorithms, Next

    2453 days ago

  • Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data

    Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using th...

    Tags: Platypus, Haplotype-Based, Variant, Caller, Next, Generation, Sequence, Data, NGS, SNP

    1981 days ago

  • Where is genomics going next? https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1626-2 #Next #Genomics #Future

    Tags: Next, Genomics, Future

    1882 days ago

  • vt: a variant tool set that discovers short variants from Next Generation Sequencing data.

    vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vt

    Tags: vt, variant, tool, discovers, short, variants, Next, Generation, Sequencing, data

    1521 days ago

  • Genobuntu: Package for Next Generation Sequencing and Genome Assembly

    Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.Commonly used biological software and example script files for different assembly p...

    Tags: Genobuntu, Package, Next, Generation, Sequencing, Genome, Assembly

    1410 days ago

  • FiNGS: Filters for Next Generation Sequencing

    Key features Filters SNVs from any variant caller to remove false positives Calculates metrics based on BAM files and provides filtering not possible with other tools Fully user-configurable filtering (including which filters to use and their thresholds) Option to use filters identical to I...

    Tags: Filters, Next, Generation, Sequencing, FiNGS, NGS

    1125 days ago

  • Beginner’s #guide to #comparative #bacterial genome #analysis using #next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2

    Tags: guide, comparative, bacterial, analysis, next

    2463 days ago

  • Qualimap2: Evaluating next generation sequencing alignment data

    Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. Supported types of experiments i...

    Tags: Qualimap2, Evaluating, next, generation, sequencing, alignment, coverage, plot, ngs, bam

    2025 days ago

  • nQuire: a statistical framework for ploidy estimation using next generation sequencing

    nQuire provides a statistical framework to study organisms with intraspecific variation in ploidy. nQuire is likely to be useful in epidemiological studies of pathogens, artificial selection experiments, and for historical or ancient samples where intact nuclei are not preserved. It is implemente...

    Tags: nQuire, statistical, framework, ploidy, estimation, next, generation, sequencing, NGS

    2002 days ago