Results for "Next generation sequencing"
Users
About me: I recently join Bioinformatics as a post grad student. My interest is in genomics and next generation sequencing technologies. I love to explore the area and do my research in it.3351 days ago
- Interests: Next Generation Sequencing
2697 days ago
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Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several p...rs: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglibbiojava-java - Java API to...3939 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by t...o (EMBL-EBI Institute) It uses extensive computational filters to allow the generation...3698 days ago
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Bookmarks
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3890 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We...strate that while existing tools are based on data generated from a specific sequencing technology, the models propos...1135 days ago
- +274 more Bookmarks
Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer amo...
3550 days ago
- Genome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.
3420 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of...3940 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3933 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it com...algebra: eigen decomposition, LU decomposition, inversion, etc.Random number generation...3936 days ago
Genome Assembly Tools and Software - PART2 !!
...map accurately reads from the next-generation sequencing technology. RMAP can ma...Genome Assemblies Merger for Next Generation SequencingGAM-NGS is able to merge...nomic analysis, starting with next-generation sequencing reads and producin...2674 days ago
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Top-level pages
- ...tegies of high-throughput DNA sequencing, so called the “high-throughput next generation sequencing” (HT-NGS). The decreasing genome sequencing cost and desire to explore an...me or protein sequences. The next step after reading genetic code is...
3936 days ago
- ...matics component. The goal of sequencing projects, for example, is not...ce data: The primary data of sequencing projects are DNA sequences. T...ST and PSI–BLAST: a new generation of protein database search pr...h;219The Genome International Sequencing Consortium (2001) Initial seq...
3936 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of the ancient DNA recor...
3801 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly name...the current and future state of all aspects and applications of Next Generation Sequencing. More at >> http:...3908 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...ystems, Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the c...3937 days ago
- van Noort Group is looking for PhD fellows We currently a...nderlies this project consists of high-throughput sequencing of DNA and mRNA of population...or this position. Experience with high throughput sequencing analysis methods, machine lea...
3937 days ago
- +125 more Opportunity posts
ResearchLabs posts
- ...f understanding in human disease. Research Area: Analysis of Next Generation sequence data in cancer...Methods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational com...
3937 days ago
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
The Human Genome Project led to the development of a wide array of technologies to scre...chemicals and other substances. The genomics platform uses cancer genome sequencing and other high-throughput tec...3908 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Ai...graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biologi...3891 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA...olved is huge, so recently, it's been read using next-generation sequencers, and analyzed by c...e of other organisms. The Sakakibara Lab uses a next-generation...3906 days ago
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Bio-Scripts
Genetic Algorithms demonstration with word DNA in Perl
...mum fitness for survival my $generation_count = 100000; # run for this many generations my $generation = 0;...returns more than mut_rate next if rand > $mut_rate; # mutate th...in the DNA, or vice versa next unless $words =~ /$entry/; # we...2360 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fastq-dump [options] IN...ol program execution environment report generation...
2115 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
...major growth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques....3405 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3186 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineeri...eveloper. What will you like to accomplish in next five years / ten years?...When you will be retired, what would you tell next generation...2351 days ago
Groups
Python is a programming language that lets you work more quickly and integrate your sys...Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python...3934 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic comple...3896 days ago
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Tags
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows Biostrings The Biostrings package from Bioconductor provides an advanced environment for efficient sequence management and analysis in R. It contains many speed and memory effective string con...Tags: Bioinformatics, Computational Biology, NGS, R, Bioconductor, Packages, Modules, Next generation sequencing
3613 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, CHiP-seq, browser and other features. Commercial. Wind...Tags: Bioinformatics, Computational Biology, NGS, Next generation sequencing, Tools, Software, SNP, Assembly, Pipeline
3508 days ago
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Comments
- ...r the quality control (QC) of next generation sequencing (NGS) data. The to...to filter, reformat and trim next-generation sequence data. It is particul...control tool designed for DNA sequencing data for raw data, alignment,...ns of data quality for second-generation sequencing data. Originally d...
2126 days ago
Comment on "Genome Assembly Tutorial"
This totorial is also very informative http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/next-generation-sequencing-ngs-software/de-novo-assembly/2682 days ago
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