Results for "Nucleotide"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1134 days ago
- The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writ...
3404 days ago
- Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/b...
2975 days ago
- ...all independently validated by Pacific Biosciences sequencing. At the single-base level with Illumina data, ALE recovers 215 of 222 (97%) single nucleotide variants in a training set fr...
2919 days ago
- ...ts recipient genome. Detecting HGT between closely related species or strains is challenging, as the phylogenetic signal is usually weak and the nucleotide composition is normally nearl...
2862 days ago
- ...4821 microbial genomes. Kaiju can also be used for querying any other protein database without taxonomic classification, using either protein or nucleotide queries. Kaiju is described...
2857 days ago
Method in Comparative genomics !!
...ily expansions in regions of rapid genomic change. We present methods for the identification of protein-coding genes based on their patterns of nucleotide conservation across related s...2722 days ago
- ...older is perfect...), which breaks synteny. pyScaf works very well if divergence between reference genome and assembled contigs is below 20% at nucleotide level. pyScaf deals with lar...
2682 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wid...
2678 days ago
- ...ntire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment job in two steps, at the block level and then at the nucleotide level. The former "coarse-gra...
2617 days ago
