Results for "Nucleotide"

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  • Clean the FASTA file

    Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.  

    3828 days ago

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  • Genome Assembly Tools and Software - PART2 !!

    ...ly aligns TranscriptSimulator reads to their nucleotide templates using read title in...s “primer”, to recursively blast nucleotide databases in an attempt to ob...and a direct comparision of trace date with nucleotide data is possible. It also all...

    2648 days ago

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  • PLATform for Assembling NUcleotide Sequences http://platanus.bio.titech.ac.jp/ #Platanus #Assembler #Genome

    2914 days ago

  • Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}' #SAM #BAM #Samtools #Tricks #NGS

    2828 days ago

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  • IMTECH Lab

    Computer Aided Protein Structure Prediction; Identification of Vaccine Candidates (T-Epitope prediction); Analysis of Nucleotide/Protein Sequences; Development of Web Server/ Softwa...

    3847 days ago

Bio-Scripts

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  • Genetic code - Amino Acid

    The genetic code consists of 64 triplets of nucleotides. These triplets are called codons.With three exceptions, each codon encodes for one of the 20 amino acids used in the synthesis of proteins. That produces some redundancy in the code: most of the amino acids being encoded by more than one co...

    Tags: Genetics, Amino Acid, Code, Genome, Nucleotide, RNA

    3441 days ago

  • Need help in Blastn?

    I am doing megablast of a contig against NR database, but unable to understand this -outfmt '6 qseqid staxids qstart qend sstart send qseq sseq evalue length' Can you please help me to undestand all these.

    Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS

    2838 days ago

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