Computer simulation of genetic mechanism !!
...d-in-time population genetic simulations. http://www.patrickmeirmans.com/software/marlin.html Mason A package for the simulation of nucleotide data. http://www.seqan.de/pro...2937 days ago
Structural variation: the hidden genomic treasure
...unts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and shor...pipeline for annotation, classification and analysis of SVs at single nucleotide resolution.2010 PEMera compu...2665 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets...1108 days ago
3378 days ago
3828 days ago
Genome Assembly Tools and Software - PART2 !!
...ly aligns TranscriptSimulator reads to their nucleotide templates using read title in...s “primer”, to recursively blast nucleotide databases in an attempt to ob...and a direct comparision of trace date with nucleotide data is possible. It also all...2648 days ago
3909 days ago
List of bioinformatics open source projects/software.
...ary protein structure given assigned Residual Dipolar Coupling data SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Staden P...3719 days ago
High Density Sheep SNP Genotyping Chip released!!!
...CSC, CSIRO, and the USDA as part of the International Sheep Genomics Consortium. It features over 54,241 evenly spaced probes that target single nucleotide polymorphisms (SNPs). More th...3859 days ago
3598 days ago
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
...iling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology all...3878 days ago
Postdoctoral Position (Bioinformatics/Computational Biology)
...iling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on the whole transcriptome level with a nucleotide precision. The technology all...3759 days ago
3847 days ago
Python script to download covid genome !
...if 'gene-region' in x and x['gene-region'] == "complete": nm = x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',id=nm, rettype = 'fasta', re...1098 days ago
Download genome using NCBI esearch command line !
...nload using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch...1063 days ago
Tags: Genetics, Amino Acid, Code, Genome, Nucleotide, RNA
3441 days ago
Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS
2838 days ago
Comment on "Tools for Sequence translation !"
.... EMBOSS Transeq: This is a command-line tool that can translate nucleotide sequences into amino acid seq...translation (i.e., convert a protein sequence into its corresponding nucleotide sequence). BioPython: Th...383 days ago
Comment on "Complete genome sequence of Wuhan seafood market pneumonia virus is out !"
CBI teams at GenBank®, the Sequence Read Archive (SRA), NCBI Virus, and BLAST continue to rapidly process and release data associated with this outbreak as it becomes...1514 days ago