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Results for "Nucleotide"

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• • Poonam Mahapatra@poonam

  

  Genetic code - Amino Acid

  The genetic code consists of 64 triplets of nucleotides. These triplets are called codons.With three exceptions, each codon encodes for one of the 20 amino acids used in the synthesis of proteins. That produces some redundancy in the code: most of the amino acids being encoded by more than one co...

  Tags: Genetics, Amino Acid, Code, Genome, Nucleotide, RNA

  3469 days ago

• • Shruti Paniwala@shruti

  

  Need help in Blastn?

  I am doing megablast of a contig against NR database, but unable to understand this -outfmt '6 qseqid staxids qstart qend sstart send qseq sseq evalue length' Can you please help me to undestand all these.

  Tags: Blastn, BLAST, Nucleotide, Alignment, Database, NR, Contig, NGS

  2866 days ago

• • Neelam Jha@neelam

  

  IUPAC codes

  IUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymine (or Uracil) R.................A or G Y.................C or T S.................G or C W.................A or T K.......

  Tags: IUPAC, codes, DNA, Nucleotide

  2235 days ago

• • Jit@jit.aber

  

  FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)

  FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies....

  Tags: fast, alignment-free, computation, whole-genome, Average, Nucleotide, Identity, ANI

  2113 days ago

• • Neelam Jha@neelam

  

  DNA Nucleotide Counter

  DNA Nucleotide Counter is delivered in a DNA Baser package together with other free molecular biology tools. Download the package and double click it. The programs inside the package will be extracted to the destination folder (specified by you). Go to the destination folder and do...

  Tags: DNA, Nucleotide, Counter, tools, scaf, chromatogram

  2022 days ago

• • Neelam Jha@neelam

  

  Consensus of nucleotide sequences https://www.perlmonks.org/bare/?node_id=500962 #Consensus #Nucleotide #DNA

  Tags: Consensus, Nucleotide, DNA

  2022 days ago

• • Abhinav@abhinav

  

  Special nucleotide characters http://www.hgmd.cf.ac.uk/docs/nuc_lett.html #Special #Nucleotide

  Tags: Special, Nucleotide

  861 days ago

• • Jit@jit.aber

  

  Rename #non-accepted #nucleotide from sequence to 'N' $ bbmap/reformat.sh in=genome.fa out=genomeOut.fa iupacToN=t

  Tags: non, nucleotide

  2477 days ago

• • Jit@jit.aber

  

  minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences

  git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam # create an index first and then map ./minimap2 -d MT-human.mmi test/MT-human.fa ./minimap2 -a MT-human.mmi test/MT...

  Tags: minimap2, versatile, pairwise, aligner, genomic, spliced, nucleotide, sequences

  2136 days ago

• • Jit@jit.aber

  

  S-plot2: creates an interactive, two-dimensional heatmap of sequences

  S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can be efficiently compared. The tool includes funct...

  Tags: S-plot2, interactive, two-dimensional, heatmap, capture, similarities, dissimilarities, nucleotide, genomic, sequences

  2036 days ago

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