BOL

Results for "OLC"

Tags

• • Jit@jit.aber

  

  Understanding #Overlap Layout #Consensus #assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

  Tags: Overlap, Consensus, assembly, OLC, Assembly

  2603 days ago

• • Jit@jit.aber

  

  DISCO : multi threaded and multiprocess distributed memory overlap-layout-consensus (OLC) metagenome assembler

  DISCO is a multi threaded and multiprocess distributed memory overlap-layout-consensus (OLC) metagenome assembler. Disco was developed as a scalable assembler to assemble large metagenomes from billions of Illumina sequencing reads of complex microbial communities. Disco was parallelized for...

  Tags: multiprocess, distributed, memory, overlap, layout, consensus, OLC, metagenome, assembler

  2475 days ago

• • Jit@jit.aber

  

  Overlap Layout Consensus assembly http://www.cs.jhu.edu/~langmea/resources/lecture_notes/assembly_olc.pdf #OLC #Assembly

  Tags: OLC, Assembly

  2352 days ago

• • Jit@jit.aber

  

  BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus

  BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembly based on the genome of a close species; (2) or improve the results of existing assemblies that are obtained base...

  Tags: BAUM, Improving, Genome, Assembly, Adaptive, Unique, Mapping, Local, Overlap-Layout-Consensus, OLC

  2003 days ago

• • Rahul Nayak@rahul

  

  CANU genome assembly parameters !

  Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like to disable cluster option, since we compute on a single Amazon server set off the option to compute on cluster useGrid=false...

  Tags: CANU, genome, assembly, parameters, NGS, LongReads, OLC

  1929 days ago