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SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes...around two days on 24 CPUs. You can find the manual here. Download the latest source code from here. Stable versio...2899 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can al...2891 days ago
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CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a ta...X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of reads. Source code on GitHub.2150 days ago
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