Results for "Open Source"
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Recent studies of the human genome have indicated that r...lements. These interaction datasets are important resources to infer distal gene targets...Apache Tomcat web server and MySQL database and the source code is available under the G...2853 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is...ive taxonomic classification for metagenomics with Kaiju. Nat. Commun. 7:11257 (open a...
2853 days ago
- The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release
2824 days ago
- ...generation Bambus scaffolder available as an open source package. While most other sca...data other than specified by mate-pairs. Such sources of information include align...synteny. Home Page: http://sourceforge.net/apps/mediawiki/amos/...
2804 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1210 days ago
AutoDock Vina: an open-source program for doing molecular docking.
AutoDock Vina is an open-source program for doing molecular docking. It was designed and implemented by Dr. Oleg Trott in the Molecular Graphics Lab at The Scripps R...1407 days ago
- Recent technological progress has greatly facilitated de novo genome seque...tigs. Software requirements BLAT (tested with Standalone BLAT v. 32×1). Source Binaries .Cytoscape (tested w...
2796 days ago
- Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content f...
2330 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a...n assemblers (e.g. Velvet). Download Minia 2.0.7 Linux 64-bits binaries (Source code) (Legacy codebase)...
2690 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of...Python and requires MUMmer and BLAST+ to be installed on the local machine. The source code of CISA and examples of...2683 days ago
