Results for "Open Source"
Bookmarks
E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source code can be downloaded h...2683 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packages....2679 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...sequences. It does not need to be supplied with any knowledge of the organism, as it learns all the properties it needs to on its own. Open Source: Prodigal source code is freely available unde...2669 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome ali...n the included tools (ex hal2maf) in the submodules/ directory structure, first source progressiveCactus/enviro...
2650 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per e...5.8.0 or later. PDL::IO::Storable is required in scripts running PDL. SOURCE AND FURTHER READING The source, cookbook, and examples are h...2636 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is a fast and accurate...TMAP version associated with a Torrent Suite release below. Get the latest source code: git clone git://gith...2574 days ago
- The official documentation of the Perl 6 programming lan...to debug Perl 6 programs, and how to hack on Perl 6 source code. The Perl 6 homepage offers a comprehensive list of Perl 6 resources, including tutorials, how-to...
2633 days ago
- Samtools is a suite of programs for interacting with high-throughput sequencing data...ut sequencing data Samtools and BCFtools both use HTSlib internally, but these source packages contain their own co...
2593 days ago
Pacbio Long Reads Compatible Software and Tools
...acBio's own SMRT® Analysis suite. All packages are believed to be open source or freely available for non...n. A separate page lists commercial software. Know of any other open source software for PacBio data?&nbs...2592 days ago
WGS Celera Assembler version 8.3rc2
These are release notes for Celera Assembler versi...nary distributions ready for installation.The source code package includes full source code (revision 4627), Makefil...n can be found online at http://wgs-assembler.sourceforge.net/. Interesting scrip...2567 days ago
