Results for "Optimal"
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InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...e genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype information to identify the optimal breakpoint graph representing...1079 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/lon...2778 days ago
CISA: Contig Integrator for Sequence Assembly
...o assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species....eters in an assembler is often performed in order to generate the most optimal assembly. However, few effort...2681 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...h reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an optimal resolution of local...2677 days ago
- ...that report all, or one, alignment per query, or that use simple heuristics to select alignments, YAHA uses a directed acyclic graph to find the optimal set of alignments that cover...
2645 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly...uses information from paired-end or long reads to optimally order and orient contigs as...n Sung, Niranjan Nagarajan. Opera: reconstructing optimal genomic scaffolds with high-t...2334 days ago
- ...I will attempt to adjust as appropriate. However, here is a tentative list of topics I hope to cover this semester (not necessarily in order). Optimal sequence alignment (global, l...
2332 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
...roach which starts branch expansion in a greedy way taking the symbols from the given pair of sequences (protein or nucleotide) and results in an optimal alignment faster than convent...2323 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://gen...2262 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...sp;did not take into account repeats. In this evaluation framework, repeats are taken into account. The new evaluation framework considers the optimal assignment of contigs in the...2220 days ago
