Results for "Overlap Graph"
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InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity amo...type information to identify the optimal breakpoint graph representing cancer genomes....1080 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and...e data into many individual de Bruijn graphs, each representing the trans...ene or locus, and then processes each graph independently to extract full...ers and constructs complete de Bruijn graphs for each cluster. Each clust...2949 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize...ologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs for a given set of elements....p; More at http://www.atgc.org/PhyloGrapher/PhyloGrapher_Welcome.html2934 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size...2912 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overl...
2786 days ago
- ...unitigs to represent all the information in raw reads.Fermi follows the overlap-layout-consensus paradigm and...bsp;(FMD-index) as the key data structure. It is inspired by the string graph assembler (Simpson and D...
2779 days ago
- Seven Bridges is the biomedical data analysis company accelerating breakthroughs in ge...uild self-improving systems to analyze millions of genomes, including the Graph Genome Suite — the...
2730 days ago
- The eFORGE tool provides a method to view the tissue specific regulatory component of a set of EWAS DMPs. eFORGE ana...cance threshold in an EWAS study, and analyses whether there is enrichment for overl...
2730 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results o...
2689 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence re...
2689 days ago
