Results for "Overlap Graph"
Top-level pages
Data mining, the extraction of hidden predictive informatio...t be your strong point. Excel is fine for creating graphs. If you’re serious abo...age informatics and scalable querying and mining of graphs.For more detail visit: ...3931 days ago
- ...programming The shortest path in a weighted graph can be found by using the short...ndependent in divide and conquer, where as the overlap of subproblems occur in dyn...problems such as the maximum flow for directed graphs, notably by using the simple...
3931 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quant...o short read assembly using de Bruijn graphs. Zerbino & Birney, Genom...2012 Full Text [Describes the String Graph Assembler (SGA), which assemb...RAD Sequencing Wiki page, with bibliography and RADTools software downlo...3764 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modi...prototyping Bio4j http://bio4j.com/ Bio4j is a bioinformatics platform and graph based database built around m...3742 days ago
List of In-silico Binding Site Prediction Tools
...Computed Atlas of Surface Topography of proteins (CASTp) provides a...of proteins. CASTp includes a graphical user interface, flexible in...icted pocket had at-least 10% overlap with the actual ligand. The...program for the detection and graphical analysis of protein surfa...3729 days ago
Next generation sequencing in R or bioconductor environment
...SIPeS RNA-Seq Analysis Counting Reads that Overlap with Annotation Ranges ...ting provided by this infrastructure are countOverlaps and summarizeOverlaps. For t...nates HilbertVis: Hilbert genome plots GenomeGraphs: Plotting genomic informatio...3610 days ago
Commercial and public next-gen-seq (NGS) software
...rom short reads. Assemblies are presented in a graph form that retains ambiguities,...me Analyzer. Edena is based on the traditional overlap layout paradigm. By D. Hern...ublished in Genome Research). Uses a de Bruijn graph approach. MIRA2 - MIRA (Mimic...3504 days ago
Software packages for next gen sequence analysis
...rom short reads. Assemblies are presented in a graph form that retains ambiguities,...me Analyzer. Edena is based on the traditional overlap layout paradigm. By D. Hern...ublished in Genome Research). Uses a de Bruijn graph approach. * MIRA2 - MIRA (Mim...3227 days ago
Genome Assembly Tools and Software - PART1 !!
...ories: string-based model and graph-based model. We therefore list...protein-coding genes using a graph structure combining both de Bru...adopts multi-step bi-directed graph (MSG). With MSG, the standard g...ene assembly, homology-guided overlap graph construction, and careful gra...2671 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, li...itoring MySQL servers rizen/Facebook-Graph - A perl module to help...igate the intricacies of the Facebook Graph API. lhost/sendxmpp - p...tg - MRTG - Multi Router Traffic Grapher monitoring-plugins/monitor...2474 days ago
