Results for "Oxford"
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...eq is a Python-based short read simulator that allows users to simulate reads from different sequencing platforms, including Illumina, PacBio, and Oxford Nanopore. It can also simulat...398 days ago
Comment on "Short-read assembly using Spades !"
...St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms...403 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1933 days ago
Comment on "nanofilt: Filtering and trimming of long read sequencing data"
Nanofilt steps https://gigabaseorgigabyte.wordpress.com/2017/06/05/trimming-and-filtering-oxford-nanopore-sequencing-reads/2022 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...parameters unless overriden. [null] (Illumina Moleculo) pacbio (PacBio SMRT): -i25 -l50 -m1 -M1 -O1,1,2,2 -E1,1,1,1 -w200 -b0 -e0.30 -d0.30 ont2d (Oxford Nanopore): -i25 -l50 -m1 -M1...2105 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nano conference https://publications.nanoporetech.com/2016/06/05/london-calling-talk-sara-goodwin-cshl-rapid-cnv-characterisation-of-clinical-cancer-samples-on-the-oxford-nanopore-minion/2873 days ago
Comment on "Does anyone have Nanopore latest updates?"
Check out the Seminar on Oxford Nanopore Sequencing; http://www.baseclear.com/news/Seminar-on-Oxford-Nanopore-Sequencing-Are-you-ready-for-the-challenges-_90_27.html2878 days ago
Comment on "Does anyone have Nanopore latest updates?"
...low cell, SmidgION will be smaller than the company’s existing MinION device, and is expected to come to market in early 2017. With SmidgION Oxford Nanopore are continuing to ap...2880 days ago
Comment on "Does anyone have Nanopore latest updates?"
...da and the U.K. have for the first time sequenced and assembled de novo the full genome of a living organism, the bacteria Escherichia Coli, using Oxford Nanopore's MinIONTM device, a...3228 days ago
Comment on "Does anyone have Nanopore latest updates?"
Sequencing ultra-long DNA molecules with the Oxford Nanopore MinION http://biorxiv.org/content/early/2015/05/20/019281.full-text.pdf+html Additional tools for analyzing Oxford Nanopore minION data by John Urban https://github.com/JohnUrban/poreminion3254 days ago
