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Results for "PANDASEQ"

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• • Neelam Jha@neelam

  

  PAired-eND Assembler for DNA sequences https://github.com/neufeld/pandaseq #Sequence #Assembler #PANDAseq

  Tags: Sequence, Assembler, PANDAseq

  2940 days ago

• • Neelam Jha@neelam

  

  PAired-eND Assembler for DNA sequences

  PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.   More at https://github.com/neufeld/pandaseq

  Tags: Bioinformatics, NGS, Assembly, Paired-End, PANDASEQ, Illumina

  2940 days ago

• • Shruti Paniwala@shruti

  

  PANDASEQ

  PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format with quality information. If amplification primers were used (e.g., to isolate a variable region of the 16S gene, or the constant regions aro...

  Tags: Bioinformatics, Assembly, PANDASEQ, Genome, NGS, Illumina

  2648 days ago

• • BioStar@biostar

  

  PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.

  Development packages for zlib and libbz2 are needed, as well as a standard compiler environment. On Ubuntu, this can be installed via: sudo apt-get install build-essential libtool automake zlib1g-dev libbz2-dev pkg-config On MacOS, the Apple Developer tools and Fink (or MacPorts or Brew) must...

  Tags: PANDASEQ, program, align, Illumina, reads, PCR, primers, sequence, reconstruct, overlapping, sequence

  2042 days ago