Results for "PIPE"
Users
About me: ...of bioinformatics and computational biology, I mainly focus on chromosomal breakpoint and amniotes evolution. I (We) develop certain computational pipeline, and algorithms to harnes...63 days ago
- Skills: ChIP-seq pipeline tools
3509 days ago
- +3 more Users
Blogs
List of bioinformatics workflow management tools !
...em scripting language for working with big data pipelines in computer systems of d...ies. [ paper-2014 | web ] Bpipe – A small language...p;– A fluent DSL modelled around the UNIX pipe concept, that simplifies writ...1127 days ago
Installing Bandage on Ubunty !
...bin/uic ui/changenodedepthdialog.ui -o ui_changenodedepthdialog.hg++ -c -pipe -O2 -std=gnu++0x -Wall -W -D_...I. -I../../anaconda3/mkspecs/linux-g++ -o main.o program/main.cppg++ -c -pipe -O2 -std=gnu++0x -Wall -W -D_...2173 days ago
- +1 more Blogs
Bookmarks
- ...enclature authority (O for official, I for interim) Other designations: pipe-delimited set of some alterna...e last date a gene record was updated, in YYYYMMDD format Feature type: pipe-delimited set of annotated fe...
1925 days ago
Pages
Awesome perl frameworks, libraries and software - PART 3
...mastering-perl book. Prajithp/letsencrypt-cpanel - cPanel/WHM plugin for Let's Encrypt client (uses perl and WHM API) mikecardwell/pipe2imap - Pipe2IMAP is a Perl script that wi...2478 days ago
Awesome perl frameworks, libraries and software - PART 4
...OS. Requires class-dump-z to be in the PATH mojombo/gollum-demo - Gollum test repo mikecardwell/gpgit - Encrypt Email using GnuPG and a pipe lxctl/lxctl - vzctl lik...2478 days ago
Top-level pages
Most Commonly used Awk by Bioinformatician
...erl, awk is simpler in many practical cases. Why awk? You can replace a pipeline of 'stuff | grep | sed |...aster to do it all with one. This is ideal for something like an openbox pipe menu where you want to genera...3897 days ago
- ...u want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f",..."/home/name/result/","/dev/stdin"],stdin=fopen("read.fastq","r") ,stdout=PIPE,stderr=PIPE) print p.stderr...
3533 days ago
- +5 more Top-level pages
Bio-Scripts
- syntax: $output = open2(\*CHLD_OUT, \*CHLD_IN, 'command arg1 arg2'); It runs a process for both reading and writing and creates a pipe to both STDIN and STDOUT. It can be used in...
1147 days ago
Tags
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f","fastq","-o", "/home/name/result/","/dev/stdin"],stdin=fopen("read.fastq","r") ,stdout=PIPE...
Tags: python, linux, PIPE
3533 days ago
Comments
Comment on "URMAP, an ultra-fast read mapper"
...-map. Use "-" (minus sign) to get input from a pipe. If the reads are gzip-compressed, the filename must end in .gz. Piped input must be decompressed (...-veryfast is used for mapping or for indexing. PipesTo get input from a pipe, use...1268 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Yahoo pipe is one of the nice resource for streaming out the important bioinformatics jobs http://pipes.yahoo.com/pipes/search?q=bioinformatics+jobs&x=0&y=03617 days ago
