Results for "PSI Blast"
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A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest...you will see how to look efficiently for a particular protein sequence, how to blast it against the database of yo...3621 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in f...of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses...2909 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for...s classification accuracy comparable to the fastest BLAST program. In its fastest mode,...million reads per minute, 909 times faster than Megablast and 11 times faster than the...2853 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput...q or the microbial subset of the non-redundant protein database nr used by NCBI BLAST, optionally also including fu...
2853 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple seq...2845 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox f...h hundreds of samples containing hundreds of millions of sequencing reads. Blast-like analysis can be performe...
2825 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produc...2793 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circu...erence sequence and other sequences as concentric rings. BRIG will perform all BLAST comparisons and file parsing...2758 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized enviro...included in this distribution which combines analysis from both Phymm and BLAST, produces even higher accurac...
2748 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in y...2","proto","xtable")) Perl Optional: BLAT or BLAST (to generate alignments again...faToTwoBit,gfClient,gfServer to your PATH. If using BLAST, add blastall and formatdb....2688 days ago
