Results for "PacBio"
Bio-Scripts
# generate dotplot lastdb test/ref.fa lastal -f TAB test/ref.fa test/contigs.reduced.pacbio.fa | last-dotplot - test/contigs.reduced.pacbio.fa.ref.png lastal -f TAB test/ref.fa test/contigs.reduced.nanopore.fa | last-dotplot - test/contigs.reduced.nanopore.fa.ref.png2235 days ago
Long reads mapper bash script !
...== "ont" ]; then $lamsaLoc aln -t $thread -T ont2d $refFasta $longReads > $fileName.out.sam elif [ $readsType == "pacbio" ]; then $lamsaLoc aln -t $thread -T pacbio $refFasta $longReads > $fileN...2106 days ago
Installing pb-assembly on Linux !
...# # PacBio(R) tools distributed via Bioc...e to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we make no warra...2017 days ago
Setting up falconUnzip conda environments for genome assembly !
...# # PacBio(R) tools distributed via Bioc...e to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we make no warra...1973 days ago
- Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam
1709 days ago
- ...loid.fasta.gz \ illuminanames=t addslash=t \ pacbio=t pbmin=0.13 pbmax=0.17 \ re...${k}" # make 30x haploid coverage for PacBio CLR reads # error rate from...loid.fasta.gz \ illuminanames=t addslash=t \ pacbio=t pbmin=0.13 pbmax=0.15 \ co...
911 days ago
Bash script to simulate a genome !
...iasm/issues/33 # Use Drosophila melongaster PacBio assembly cd /genetics/elbers...loid.fasta.gz \ illuminanames=t addslash=t \ pacbio=t pbmin=0.13 pbmax=0.17 \ re...${k}" # make 30x haploid coverage for PacBio CLR reads # error rate from...901 days ago
