Genome Assembly Tools and Software - PART1 !!
...s Reads A fast and memory-efficient method for haplotype assembly from long gapless reads, like those produced by SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore fl...2648 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...lding genome assembly with error-containing long sequence (e.g., ONT or PacBio reads, draft genomes) Softwa...Mash Species identification using assembled or unassembled Illumina, PacBio, and ONT data (based on MinHa...2334 days ago
2314 days ago
Frequent parameters for bioinformatics tools !
...33” Filtlong --min_length 500 --min_mean_q 85 --min_window_q 65 FastQ Screen --aligner bowtie2' (bwa for PacBio) --subset 1000 (for PacBio) SPAdes --careful...1248 days ago
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Bioinformatics tools for genome assembly !
...nomes. MaSuRCA: A hybrid assembler that combines data from multiple sequencing technologies, such as Illumina and PacBio. Canu: A long-read assembler optimized for PacBio and Oxford Nanopore sequencin...249 days ago
Mitochondrial genome assembly tools !
...al genomes and annotate mitochondrial genes from trimmed read sequencing data. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads MITObim:...205 days ago