Results for "Package"

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  • Painless package development for R

    Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes so easy that it will be your default layout whenever you’re writing a...

    Tags: Bioinformatics, R, Dev, Package, Devtools, RPackages, Tutorial

    661 days ago

  • RCircos: an R package for Circos 2D track plots

    RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to generate comple...

    Tags: Bioinformatics, NGS, R, Rcircos, Package, Plot, Circle, Genome, Genes, Visualization

    644 days ago

  • clusterProfiler

    statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author: Guangchuang Yu <guangchuangyu at gmail.com>...

    Tags: Bioinformatics, clusterProfiler, GO, R, Package, Omics, Genes, Cluster

    616 days ago

  • progressiveCactus

    Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactus

    Tags: Progressive, Cactus, Whole-genome, Alignment, Package, progressiveCactus

    281 days ago

  • poRe: an R package for the visualization and analysis of nanopore sequencing data

    Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a s...

    Tags: poRe, R, package, visualization, analysis, nanopore, sequencing, data

    92 days ago

  • dupRadar package

    The dupRadar package gives an insight into the duplication problem by graphically relating the gene expression level and the duplication rate present on it. Thus, failed experiments can be easily identified at a glance

    Tags: dupRadar, package, R, rna-seq

    18 days ago