Results for "Package"

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  • Painless package development for R

    Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes so easy that it will be your default layout whenever you’re writing a...

    Tags: Bioinformatics, R, Dev, Package, Devtools, RPackages, Tutorial

    2887 days ago

  • RCircos: an R package for Circos 2D track plots

    RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also serve as a base tool to generate comple...

    Tags: Bioinformatics, NGS, R, Rcircos, Package, Plot, Circle, Genome, Genes, Visualization

    2870 days ago

  • clusterProfiler

    statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.Author: Guangchuang Yu <guangchuangyu at gmail.com>...

    Tags: Bioinformatics, clusterProfiler, GO, R, Package, Omics, Genes, Cluster

    2842 days ago

  • progressiveCactus

    Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactus

    Tags: Progressive, Cactus, Whole-genome, Alignment, Package, progressiveCactus

    2507 days ago

  • SOAP2 : Short Oligonucleotide Analysis Package 2

    SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Anal...

    Tags: SOAPaligner, soap2, SOAP, Short, Oligonucleotide, Analysis, Package

    2137 days ago

  • UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties

    UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a matrix layout and introduces aggregates based on groupings and queries. The matrix layout enables the effective representation of associated data, such as the number of elements in the aggregates ...

    Tags: UpSetR, R, Package, Visualization, Intersect, Properties

    1886 days ago

  • Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit, and Align Reads To Reference Sequence)

    Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence in targeted regions. Consed is compatible wi...

    Tags: Consed, Finishing, Package, BAM, Viewer, Assembly, Editor, Autofinish, Autoreport, Autoedit, Align, Reads, Reference, Sequence

    1512 days ago

  • Instructions for Creating Your Own R Package

    The following is a step-by-step guide to creating your own R package.  Even beyond this course, youmay find this useful for storing functions you create for your own research or for editing existingR packages to suit your needs. This guide contains three different sets of instructions. ...

    Tags: Instructions, Create, Own, R, Package

    1500 days ago

  • Genobuntu: Package for Next Generation Sequencing and Genome Assembly

    Genobuntu is a software package containing more than 70 software and packages oriented towards NGS. In its current version, Genobuntu supports pre assembly tools, genome assemblers as well as post assembly tools.Commonly used biological software and example script files for different assembly p...

    Tags: Genobuntu, Package, Next, Generation, Sequencing, Genome, Assembly

    1410 days ago

  • R Package for PCA Analysis

    An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on GitHub: https://github.com/Devashish13/PopulationStructure

    Tags: PCA, R, Package, Tool

    4 days ago