Results for "Packages"
Top-level pages
...g a script to analyse and explore the hidden information. This tutorial is aimed to introduce you new biological programming languages with their packages/libraries, and assist in your...3930 days ago
- ...graphs. If you’re serious about data mining though, you’ll need something more heavy weight. I use R, free, and with good data mining packages such as vegan and labdsv. For...
3929 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...rvice to test for over-representation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq software - a list of software packages, both commercial and open-sou...3762 days ago
List of bioinformatics open source projects/software.
...https://cabig-stage.nci.nih.gov/community/tools/caArray ontologic representation environment EMBOSS http://emboss.sourceforge.net/ Suite of packages for sequencing, searching, et...3739 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...tmlHapSim A simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients http://cran.r-project.org/web/packages/hapsim/index.htmlHAPSIMU A pr...3720 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts.bioengr.uic.edu/castp/ Computed Atlas of Surface Topography of pr...3727 days ago
Next generation sequencing in R or bioconductor environment
...many other sequence analysis packages. Documentation IRanges...port for many more high-level packages like GenomicRanges, ShortRead...sed genome sequence. BSgenome packages exist for many common genomes...combines a variety of HT-Seq packages to a pipeline for ChIP-Seq da...3607 days ago
- ...miRNA: miRNA Sequencing data analysis : http://tools.genxpro.net/omiras/ miRNApath( R based tool) : http://www.bioconductor.org/packages/release/bioc/html/miRNApath.h...
3479 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq softwa...3225 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ion: Improved Bayesian inversion somatic caller; unlike other software packages, treats effects fully probabi...se-Control Rare Variant Analysis Tool and Quantitative Trait; software packages for large-scale analysis of r...2891 days ago
