Results for "Paired-End"

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  • PAired-eND Assembler for DNA sequences

    PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.   More at https://github.com/neufeld/pandaseq

    Tags: Bioinformatics, NGS, Assembly, Paired-End, PANDASEQ, Illumina

    536 days ago

  • Sequence assembly with MIRA 4

    MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka Sanger sequencing) 454 pyro-sequencing (GS20, FLX or Titanium) Ion Torrent Solexa (Illumina) sequencing ...

    Tags: Bioinformatics, NGS, Assembly, Paired-End, MIRA, Illumina

    536 days ago

  • PEAR

    PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it ...

    Tags: Bioinformatics, Analysis, Assembly, Genome, PEAR, Merge, Paired-End

    279 days ago

  • misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads

    We present misFinder, a tool that aims to identify the assembly errors with high accuracy in an unbiased way and correct these errors at their mis-assembled positions to improve the assembly accuracy for downstream analysis. It combines the information of reference (or close related reference) ...

    Tags: misFinder, Identify, mis-assemblies, unbiased, manner, reference, paired-end, reads

    27 days ago