Results for "Paired-End"

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  • PAired-eND Assembler for DNA sequences

    PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence.   More at https://github.com/neufeld/pandaseq

    Tags: Bioinformatics, NGS, Assembly, Paired-End, PANDASEQ, Illumina

    594 days ago

  • Sequence assembly with MIRA 4

    MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka Sanger sequencing) 454 pyro-sequencing (GS20, FLX or Titanium) Ion Torrent Solexa (Illumina) sequencing ...

    Tags: Bioinformatics, NGS, Assembly, Paired-End, MIRA, Illumina

    594 days ago

  • PEAR

    PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it ...

    Tags: Bioinformatics, Analysis, Assembly, Genome, PEAR, Merge, Paired-End

    337 days ago

  • Meraculous: De Novo Genome Assembly with Short Paired-End Reads

    We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of the haploid yeast Pichia stipitis. More than 95% of the genome is recovered, wi...

    Tags: Meraculous, De Novo, Genome, Assembly, Short, Paired-End, Reads

    14 days ago