Results for "Parameters"
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GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...sents a significant improvement over the state-of-the-art for PacBio read mappers. GraphMap was also designed for ease-of-use: the default parameters can handle a wide range...3215 days ago
- ...oth simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it...
2978 days ago
- ...PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and spliced alignment. Train alignment parameters for unusual kinds of sequence...
2969 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...s. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 bp. This manual, describes how to choose the parameters and tune mrFAST with respect...2922 days ago
YASS :: genomic similarity search tool
...ing to the sequence background frequencies parameterizable output filter for low complexity repeats reporting of various alignment statistical parameters (mutation bias along triplets...2915 days ago
- ...ssembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is abl...
2809 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...g time and system memory when simulating very large grids. Input parameters' arguments may be specified i...Many adjustments have been made for refined control of the input of parameters and data output. See updates...2763 days ago
- ...rozygosity rate, and repeat content from unprocessed short reads. These features are essential for studying genome evolution, and help to choose parameters for downstream analysis. We d...
2336 days ago
- ...command line looks like: ./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out output_prefix Type ./minia for a quick explanation of the parameters. For more information, refer...
2695 days ago
- ...run Velvet in general, how to accurately estimate the insert size of a paired-end library through the use of Bowtie, the primary parameters of velvet, and the process in...
2694 days ago
