Count GC Content in nucleotide sequence with Perl
...-------------------------------------------------- #Deal with passed parameters #---------------------------...) ) { print "Couldn't create $out_file\n"; exit; } print "Parameters:\nfasta file = $fasta_file\no...2868 days ago
2655 days ago
Long reads mapper bash script !
...nimap2 bwaMemLoc=/home/urbe/anaconda3/bin/bwa ngmlrLoc=/home/urbe/Tools/ngmlr/bin/ngmlr-0.2.3/ngmlr lamsaLoc=/home/urbe/Tools/LAMSA/lamsa #Parameters accepted toolName=$1 refFas...2085 days ago
2037 days ago
Perl script to run in parellel !
...y ($chr_set, $chr_seq) = @_; print "starting XFOIL instance with parameters $chr_set!\n"; touch( "$chr_set.out", $chr_seq ); print "finished run with parameters $chr_set!\n"; } sub touch...1649 days ago
Create random 10000 SNPs in genome !
...= 10000 The option titv_ratio has been specified: titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021] Introducing random SNPs based on the following parameters: > snp_count = 10000 > titv...1173 days ago
Create random 1000 INDEL in genome !
..._constant has been specified: indel_size_powerlaw_constant = 0.5 [Sun Jan 10 16:14:00 2021] Introducing random INDELs based on the following parameters: > indel_count = 1000 > ins...1173 days ago
Create random 1000 CNVs in genome !
...100 The option cnv_min_size has been specified: cnv_max_size = 10000 [Sun Jan 10 16:24:20 2021] Introducing random CNVs with the following parameters: > cnv_count = 100 > cnv_ga...1173 days ago
Create random 5 inversions in genome !
...ion_max_size has been specified: inversion_max_size = 100000 [Sun Jan 10 16:30:40 2021] Introducing random Inversions based on the following parameters: > inversion_count = 5 > in...1173 days ago
Create random 2 translocations in genome !
...cation_count has been specified: translocation_count = 2 [Sun Jan 10 17:12:58 2021] Introducing random Translocations based on the following parameters: > translocation_count = 2...1173 days ago