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Results for "Pattern"

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• • Jit@jit.aber

  

  Detect the sequence pattern and its location in fasta file with match and mismatches information.

  This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl

  Tags: Centromere, AI, Perl, Pattern, Regular Expression, Extract Region

  3856 days ago

• • Rahul Agarwal@raag

  

  Suffix Trees ! http://www.cs.cmu.edu/~ckingsf/bioinfo-lectures/suffixtrees.pdf #SuffixTree #Pattern

  Tags: SuffixTree, Pattern

  3602 days ago

• • John Parker@parker

  

  Search a PATTERN in a file and print the line. perl -ne '/PATTERN/ && print' fileName #Perl #Pattern #Print #Search #Line

  Tags: Perl, Pattern, Print, Search, Line

  3502 days ago

• • Aasha@aasha

  

  Efficient genome searching with Biostrings and the BSgenome data package

  Tags: BioStrings, R, Search, Pattern, Genome, Chromosome, Bioinformatics

  2969 days ago

• • Aasha@aasha

  

  Pattern Searching in a Single Genome

  Pattern searching holds much importance for biologists , for the understanding of DNA ( and its functionality) can be more than a matter of satisfying curiosity , but also give answers to many issuess uchas medical conditions . However,there are a number of ways of searching with in a single chro...

  Tags: Bioinformatics, Genomics, Pattern, Chromosome, Study

  2969 days ago

• • Jit@jit.aber

  

  Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

  Tags: Reads, NGS, Extract, Pattern

  2489 days ago

• • Jit@jit.aber

  

  Extract fasta with pattern $ perl -n -e '$on=(/^>(A)/) if (/^>/); print $_ if ($on);' pilonCor_round1.fasta > A_set.fa #Pattern #Extract #Fasta

  Tags: Pattern, Extract, Fasta

  1898 days ago

• • Jit@jit.aber

  

  Print all the values beetween a pattern "abc" > awk '/abc/{flag=1;next}/mno/{flag=0}flag' file #awk #print #range #pattern

  Tags: awk, print, range, pattern

  2997 days ago

• • Jit@jit.aber

  

  Find matching file names with pattern in a directory. $ ls -dq *_name2search_* | wc -l #file #search #hits #pattern #names #directory

  Tags: file, search, hits, pattern, names, directory

  2225 days ago

• • Rahul Nayak@rahul

  

  #Extract all the files from a #directory and #sub-dir with #pattern. $ find TrimmedDir -type f | grep "L_" | xargs -i cp {} .

  Tags: Extract, directory, sub, pattern

  2218 days ago

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