SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...e c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C...er, F.A. Hamprecht (2011). SIMA: Simultaneous Muliple Alignment of LC/MS Peak Lists, Bioinformatics 27(7):9...2318 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...a python script for analysing the mathematical distributions present in the K-mer spectra in order to determine how much content is present in each peak. This README only contains s...1945 days ago
1928 days ago
Cactus: a reference-free whole-genome multiple alignment program
...ized genomes (3 gigabases each), you should expect Cactus to use approximately 120 CPU-days of compute per genome, with about 120 GB of RAM used at peak. The requirements scale rough...1691 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
...l regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data. Our database currently contains ~10,200 curated peak datasets derived from ChIP-se...821 days ago