Next generation sequencing in R or bioconductor environment
...C ChIP-Seq. chipseq The chipseq package combines a variety of HT-Seq packages to a pipeline for ChIP-Seq data analysis. Documentation BayesPeak BayesPeak is a peak calling package for...3609 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...enome tracks; allows user to compare DNA expression/binding; Input: multiple: SGR/TXT, BED, BED6, GFF; if using prealigned sequence data- use MACS peak caller: BAM, BED, SAM, ELAND...2894 days ago