Results for "Perl"
Users
Skills: PerlSkills: BioPerl3 hours ago
- Skills: Perl
580 days ago
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Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...r you need to install several perl modules and dependencies. Installing Perl modules manually by resolving...tion as shown below. Install Perl Modules using CPAN automatica...nbsp; 00:00(3/5): perl-CPAN-1.9205-31.fc9.i386.rpm&n...quick and best way to install Perl modules, Bioperl. Following a...3940 days ago
Five unique traits of effective computational biologist
...y shut out. In other concrete term, the bad biological programmer learn Perl's regular expression when the...interesting; and the great biological programmer also read about the BioPerl packages, genomics, DNA strin...3940 days ago
- +12 more Blogs
Bookmarks
- Nice step wide information on perl module installation.
3940 days ago
- Citrus Perl is a binary distribution of Perl created for GUI application developers. The distribution includes wxPerl, the Perl wrapper for wxWidgets. Where supported by the operating system wxWidgets is available as a package for the 2.8.x stable branch and the 2.9.x development branch.
3907 days ago
- +51 more Bookmarks
Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly...3943 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3858 days ago
- +2 more Files
Discussion topics
- Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
3941 days ago
- ...tics and recently started learning Perl. I found several rival distri...s if necessary. Whereas ActivePerl has a lot of prepackaged modu...l with PPM. In addition, DWIM Perl contains the standard Perl an....citrusperl.com/ http://strawberryperl.com/
3906 days ago
Pages
- ...mming language that combines syntax inspired by Perl with Smalltalk-like features....Matz" Matsumoto. It was influenced primarily by Perl, Smalltalk, Eiffel, and Lisp....herefore similar in varying respects to Python, Perl, Lisp, Dylan, Pike, and CLU....
3937 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate the bioinformatics in scientific way. Therefore, instead of writting it again...
3911 days ago
- +11 more Pages
Top-level pages
Bioinformatics Courses Around the World
...y Kevin Karplus, UC Santa Cruz) Iowa State University, PhD Program in Bioinformatics and Computatinal Biology (Ames, Iowa) Perl Programing Course for Bioinfo...3933 days ago
Useful Links for Bioinformaticians
...ava/FAQs-and-Tutorials.html http://www.javaworld.com/ http://www.simplilearn.com/resources-to-learn-java-programming-article Perl Tutorials www.devdaily.com/perl/ www.pageresource.com/cgirec...3120 days ago
- +22 more Top-level pages
Wire posts
News
Bioinformatics: Introduction to PERL
...d provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand mo...course will be taught using the online Learning Perl materials created by Sofia Ro...3941 days ago
Perl Maven tutorial by Gabor Szabo
I personally reccoment this tutorial for Perl users. More detail http://perlmaven.com/3912 days ago
- +1 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...AIZING http://www.amaizing.fr/). The position requires a doctoral degree (PhD) in bioinformatics with strong expertise in script writing (Python/Perl) and pipeline development....3939 days ago
- ...are a prerequisite for this position. Experience with high throughput sequencing analysis methods, machine learning, protein interaction databases, perl/python scripting or Bioconduc...
3939 days ago
- +70 more Opportunity posts
Fun
Perl Poem: Parse it in both Perl and English!
...dowed by that of the reigning Perl Poet, Sharon Hopkins. She has written quite a few Perl poems, as well as a paper on...es: Computer Poetry Meets the Perl Programming Language". (The p...length(of-days) # listen (a perl poem)# Sharon Hopkins# rev. J...3908 days ago
Bioinformatician special skills !!
...]?\d+))?)/; next unless /((?:(?!\\$).)*)/; $line =~ /^(.+)(e|r)(.*)$/; /"(?:[^"\\]++|\\.)*+"/; /^[+-]?\ *(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?$/; perl -ne 'BEGIN{$/=">"}if(/^s*(...3886 days ago
- +1 more Fun
Video
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David Francis, Ohio State University. Delivered live at the...3887 days ago
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1207 days ago
- ...te a folder where you want to install different Perls, and cd into it: # Note tha...ver you want to maintain such software: export PERL_BASE="$HOME/perl" mkdir -p $...here at MSKCC: curl -sL https://cpanmin.us | $PERL_BASE/perl-5.24.1/bin/perl - -...
2134 days ago
- +166 more Bio-Scripts
Groups
Perl(Practical Extraction and Reporting Language) is a fa...purpose, interpreted, dynamic programming languages. Perl was originally developed by L...uage to make report processing easier. But, nowadays perl is the heart of biological/ge...3943 days ago
Ruby is a dynamic, reflective, general-purpose object-oriented programming language that combines syntax inspired by Perl with Smalltalk-like features. It was also influenced by Eiff...3910 days ago
Tags
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools, etc.),...Tags: Bioinformatics, Computational Biology, Perl, NGS, Genome, Hacking, One-liner, Oneliner
3618 days ago
Rosalind Problem Solution with Perl
Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. Bioinformatics Textbook Track Find more about Rosalind puzzle at http://rosalind.info/problems/list-view/?location=bioinformatics-textbook-track I will...Tags: Bioinformatics, Computational Biology, Education, Solution, Puzzle, Study, Script, Perl, Frequest, Words, Rosalind
3242 days ago
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Comments
Comment on "Benchmarking Perl Module !"
...e. This can be done using the Perl Benchmark module, which provi...nd compare the performance of Perl code. Here is a quick guide...ses the functionality of your Perl module. This program should t...mpare the performance of your Perl module to other modules or to...405 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl406 days ago
- +68 more Comments
