Results for "Perl"
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...o take you through the main features and gotchas of configuring GBrowse as a server. This tutorial assumes that you have successfully set up Perl, GD, BioPerl and the other GBrowse depende...2986 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of a given set of organisms. Using the proteomes of these organisms, AccNET create a bipar...
2756 days ago
- ...s in Bioinformatics and Computational Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl/R scripts for running the ana...
2871 days ago
Linux command line exercises for NGS data processing
...xercises as it is a language in itself and is used more often to manipulate NGS data as compared to the other command line tools such as grep, sed, perl etc. Furthermore, having a co...2863 days ago
- ...ommand line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the...
2856 days ago
Standardized velvet assembly report
...plot2 (from R prompt type install.packages("ggplot2","proto","xtable")) Perl Optional: BLAT or BLAST...icular attention to the kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize mysequences.fa &...2693 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) packag...2683 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number...2682 days ago
Many-Core Engine (MCE) for Perl example
...odule allows 3 options; :manager, :worker, and :getter. REQUIREMENTS Perl 5.8.0 or later. PDL::IO::Stor...and examples are hosted at GitHub. https://github.com/marioroy/mce-perl https://github.com/mario...2640 days ago
- The official documentation of the Perl 6 programming language is now...built-in subroutines and methods. Perl 6 ProgramsA collection of documents describing how to run the Perl 6 executable program and othe...erl 5 language can be found on the Perl 5 documentation website. Bio...
2637 days ago
