jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver,...2329 days ago
DendroPy: a Python library for phylogenetic computing
...netic trees and character matrices, and supports the reading and writing of phylogenetic data in a range of formats, such as NEXUS, NEWICK, NeXML, Phylip, FASTA, etc. Application scri...2194 days ago
ExRec: Exclusion of Recombined DNA
...ons: the first two convert folders of NEXUS or PHYLIP files into the standard input...nation-filtered data in concatenated NEXUS and PHYLIP formats and a tab-delimited t...ation-filtered data into single-locus NEXUS or PHYLIP files. The ExRec package can...28 days ago