BBTools for bioinformatician !
...rk/remove sequence duplicates (optical/PCR/otherwise) from NGS data This does NOT require alignments so it should prove more useful compared to Picard MarkDuplicates. Relevant opti...2260 days ago
Illumina based assembly pipeline steps !
...(Bowtie 2) Sort and index alignments (SAMtools) Primer sequence removal (iVar; amplicon data only) Duplicate read marking (picard; optional) Alignment-level QC (picard, SAMtools) Genome-wide and a...867 days ago